Welcome to BnaOmics Portal
A comprehensive database for rapeseed genetics discovery and crop improvement.
Please cite: Cui, X. et al (2023) BnaOmics: a comprehensive platform combining pan-genome and multi-omics data of Brassica napus. Plant Communications.
Data
Genomics
Collection of rapeseed reference genome assemblies, annotations, gene expressions and epigenome information
Variations
Variations including single nucleotide polymorphisms (SNPs) and structure variations (SVs)
Phenotypes
Collection of rapeseed maps, phenotypes and related genetic locus, including GWAS, etc.
Populations
Collection of rapeseed populations and provides necessary information to understand the population structures.
Transcriptomics
Search and view gene expression across different germplasm accessions and different tissues.
Epigenomics
Search and view DNA methylation, histone modification and chromatin interaction information of different samples.
Search
Search Genes
Search genes and transcripts by species, dataset, genome location
Search Orthogroup
Search orthogroup by gene or transcript.
Search Synteny Blocks
Search synteny block genes by pan-genome v4 genes
Search Germplasm
Search germplasm by name, population, ecotype or region
Search SNPs and SVs
Search SNPs and SVs
Search Trait Value
Search traits value of each germplasm
JBrowse
Browse genomics data, such as variant, genome, transcripts
Pan-genome Browser
Browse pan-genome data, such as variant, genome, transcripts
BLAST
Search for one or more sequences using BLAST
Sequence Retrieval
Extract sequences by providing the sequence name
Gene Converter
Search correspondent genes among different B. napus genomes
Gene Expression View
View gene expression in different tissues
Gene PAV View
Visualize gene PAV information in 381 germplasms
Synteny Viewer
View syntenic blocks among Brassica napus genomes
Sequence Manipulation Suite
A collection of programs for generating, formatting, and analyzing short DNA and protein sequences
Search DNA Methylation
Search and view DNA methylation information in 5 tissues and 91 different samples under pan-genome context
Search Chromatin Interaction
Search and view chromatin interaction information in 8 different genomes
Search Histone Modification
Search and view histone modification information in 216 different samples
GWAS View
View SNP, SV and PAV-GWAS results under pan-genome context
GO/KEGG Enrichment
GO/KEGG enrichment for 26 different B. napus genomes