BLAST

Search for one or more of your sequences (using BLAST). First pick a query type (nucleotide or protein). You will be able to set search parameters on the next page. Choose the appropriate program based on the Query type and Target database type. Please click on the program name to view the search form.

Query Type Database Type BLAST Program
Nucleotide Nucleotide blastn: Search a nucleotide database using a nucleotide query.
Protein blastx: Search protein database using a translated nucleotide query.
Protein Nucleotide tblastn: Search translated nucleotide database using a protein query.
Protein blastp: Search protein database using a protein query.
BLAST Reference
Altschul,S.F., Gish,W., Miller,W., Myers,E.W. and Lipman,D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403–410.

Description and source of BLAST databases

Database Name Source
Brassica napus pan-genome v3
Brassica napus Westar genome
Brassica napus Kale genome    
Brassica napus Mendel genome
Brassica napus LT genome  
Brassica napus ZS11 genome FAFU Chen et al. 2020
Brassica napus ZS11 genome HZAU Song et al. 2020
Brassica napus ZS11 genome v201608 Sun et al. 2017
Brassica napus Darmor genome v4.1 Chalhoub et al. 2014
Brassica napus Darmor genome v10 Rousseau-Gueutin et al. 2020
Brassica napus Express617 genome v1 Lee et al. 2020
Brassica napus NY7 genome v2 Zou et al. 2019
Brassica napus ganganF73 genome Song et al. 2020
Brassica napus no2127 genome Song et al. 2020
Brassica napus quintaA genome Song et al. 2020
Brassica napus shengli3 genome Song et al. 2020
Brassica napus tapidor3 genome Song et al. 2020
Brassica napus westar genome HZAU Song et al. 2020
Brassica napus zheyou73 genome Song et al. 2020
Brassica oleracea capitata line 02–12 genome v1.1 Liu et al. 2014
Brassica oleracea TO1000DH genome Parkin et al. 2014
Brassica oleracea HDEM genome Belser et al. 2018
Brassica oleracea var. capitata D134 genome Lv et al. 2020
Brassica oleracea JZS(02-12) genome v2 Cai et al. 2020
Brassica oleracea cauliflower Korso genome Guo et al. 2021
Brassica oleracea pointed cabbage OX-heart genome Guo et al. 2021
Brassica rapa Z1 genome Belser et al. 2018
Brassica rapa Chiifu genome v1.5 Wang et al. 2011
Brassica rapa Chiifu genome v2.5 Cai et al. 2017
Brassica rapa Chiifu genome v3 Zhang et al. 2018
Brassica juncea var. tumida(T84-66) genome v1.5 Yang et al. 2016
Brassica juncea Varuna genome Kumar et al. 2020
Brassica nigra YZ12151 genome Yang et al. 2016
Brassica nigra C2 genome v1 Perumal et al. 2020
Brassica nigra NI100 genome v2 Perumal et al. 2020
Brassica nigra Sangam genome Kumar et al. 2020
Brassica carinata zd-1 genome Song et al. 2021
Raphanus sativus skr genome v1 Shirasawa et al. 2020
Thellungiella parvula genome v2 Dassanayake et al. 2011